DiversityDescriptionsModel 3.0.15
Contents
- 1 DiversityDescriptions Information Model (version 3.0.15, 11 July 2016)
- 1.1 dwbD Database Scheme
- 1.2 ER Diagrams
- 1.2.1 Overview over all entities and relations used in the database model
- 1.2.2 A short introduction
- 1.2.3 Table: BaseEntity
- 1.2.4 Table: BaseEntityTable_Enum
- 1.2.5 Table: CategoricalSamplingData
- 1.2.6 Table: CategoricalState
- 1.2.7 Table: CategoricalSummaryData
- 1.2.8 Table: DataStatus_Enum
- 1.2.9 Table: Description
- 1.2.10 Table: DescriptionScope
- 1.2.11 Table: Descriptor
- 1.2.12 Table: DescriptorInapplicability
- 1.2.13 Table: DescriptorStatusData
- 1.2.14 Table: DescriptorTree
- 1.2.15 Table: DescriptorTreeNode
- 1.2.16 Table: DescriptorTreeNodeRecFrequency
- 1.2.17 Table: DescriptorTreeNodeRecModifier
- 1.2.18 Table: DescriptorTreeNodeRecStatMeasure
- 1.2.19 Table: Frequency
- 1.2.20 Table: ImportMapping
- 1.2.21 Table: ImportSession
- 1.2.22 Table: Modifier
- 1.2.23 Table: MolecularSequenceData
- 1.2.24 Table: MolecularSequenceSamplingData
- 1.2.25 Table: OtherScope
- 1.2.26 Table: Project
- 1.2.27 Table: Project_AvailableScope
- 1.2.28 Table: QuantitativeSamplingData
- 1.2.29 Table: QuantitativeSummaryData
- 1.2.30 Table: Resource
- 1.2.31 Table: ResourceVariant
- 1.2.32 Table: ResourceVariant_Enum
- 1.2.33 Table: SamplingEvent
- 1.2.34 Table: SamplingUnit
- 1.2.35 Table: SexStatus_Enum
- 1.2.36 Table: StatisticalMeasure_Enum
- 1.2.37 Table: TextDescriptorData
- 1.2.38 Table: TextSamplingData
- 1.2.39 Table: Translation
- 1.2.40 Table: TranslationColumn_Enum
- 1.3 Project related tables
DiversityDescriptions Information Model (version 3.0.15, 11 July 2016)
Authors | G. Hagedorn, A. Plank, A. Link, G. Rambold & D. Triebel 2016 |
License | ![]() |
Suggested citation | G. Hagedorn, A. Plank, A. Link, G. Rambold & D. Triebel (2016). DiversityDescriptions information model (version 3.0.15). http://www.diversityworkbench.net/Portal/DiversityDescriptionsModel_3.0.15 |
Notes | The models currently reside in MS SQL Server, so knowledge of some SQL Server ER-diagram conventions will be helpful.
Besides the screen shots below, a Microsoft T-SQL-Script for the generation of the tables is provided. |
dwbD Database Scheme
This information model is available as dwbD database scheme with each single data table and data column referenced as term or concept by its own stable and persistent URL.
ER Diagrams
Overview over all entities and relations used in the database model
The colors in the diagram indicate the logical group of the tables as described in the legend. Some “housekeeping” fields and tables for the documentation when and by whom the data were inserted or changed are not shown in the overview or the detail diagrams.
A short introduction
- The "Descriptive terminology" with the main tables "Descriptor" and "CategoricalState" provides the means to express the description details. The two fixed enumeration tables "DataStatus_Enum" and "StatisticalMeasure_Enum" provide values defined in the SDD standard 1.1 rev 5.
- The "Descriptions" part with the main table "Description" reflects the items themselves. Each description must be assigned to a project (see part 3) and references entries from the descriptive terminology. These references are reflected by the tables "CategoricalSummaryData", "QuantitativeSummaryData" and "TextDescriptorData", where additional item specific data are stored.
- The "Projects" part with the main tables "Project", "DescriptorTree" and "DescriptorTreeNode" build the anchor for the descriptions, which must be assigned to a project. Further functions are a hierarchical organization of the descriptors and restriction of the descriptive terminology to certain projects. Additionally it is possible, to define recommended values of statistical measure, modifier and frequency associated to certain branches of a descriptor tree or single descriptors. If for a certain project no descriptor tree is created, there is no restriction, i. e. all descriptors may be used.
- The "Resources" part supports management of media links for descriptions, descriptors and categorical states.
- The "Auxilliary" part provides unique key values for the main tables of the model by table BaseEntity. All relations are built by using those unique keys. By connecting support tables to the BaseEntity (here "Translation") it is possible to provide specific centralized features to all corresponding objects.
Table: BaseEntity
The BaseEntity is used within the database to provide unique keys
Column | Data type | Description |
---|---|---|
id | int | Database-internal object ID, unique across all tables in database (primary key) |
table_id | int | References the table name of table entries associated with the BaseEntity; NULL indicates orphaned entries and may be used for garbage collection of otherwise deleted object ids |
specific_rights_text | nvarchar (255) | To be used where the licence for an object differs from the default project licence |
specific_licence_uri | nvarchar (255) | URI of licence, where different from project licence |
Table: BaseEntityTable_Enum
The BaseEntityTable_Enum contains the names of tables that reference the BaseEntity table
Column | Data type | Description |
---|---|---|
id | int | Database-internal object ID of this record (primary key) |
table | nvarchar (255) | Name of table that references the BaseEntity table |
Table: CategoricalSamplingData
The categorical data recorded for a sampling event
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
sampling_unit_id | int | Reference to the sampling unit (foreign key) |
state_id | int | Reference to the state (descriptor is implicit in state_id) (foreign key) |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the values |
modifier_id | int | Optional reference to a modifier definition (e.g. "strongly", "at the base", "in autumn") (foreign key) |
frequency_value | int | Number of times this category was observed within a single sampling unit |
Table: CategoricalState
The categorical states available for categorical descriptors
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
descriptor_id | int | Reference to the descriptor to which the state belongs (foreign key) |
label | nvarchar (255) | Short label (or name) of descriptor state |
abbreviation | nvarchar (255) | Abbreviated label of descriptor state |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the descriptor state definition |
wording | nvarchar (255) | Optional separate wording for natural language generation (label will be used if this is missing) |
display_order | int | A positive number defining the sequence in which descriptor states are displayed DefaultValue: '0' |
Table: CategoricalSummaryData
The categorical data of a description
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
description_id | int | Reference to the description to which these data belong (foreign key) |
state_id | int | Reference to the state (the descriptor is implicit in state_id) (foreign key) |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the values |
modifier_id | int | Optional reference to a modifier definition (e.g. "strongly", "at the base", "in autumn") (foreign key) |
frequency_id | int | Optional reference to a frequency modifier definition (e.g. "rarely", "usually", "mostly") (foreign key) |
Table: DataStatus_Enum
Values of data status used for descriptions according to SDD 1.1 rev 5
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of data status |
code | nvarchar (255) | Code of data status |
abbreviation | char (1) | Single (intuitive) character |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the data status definition |
Table: Description
The description in the database
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of description |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the description definition |
project_id | int | Each description belongs to exactly one project (required, foreign key) |
Table: DescriptionScope
The scope of the description
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
description_id | int | Reference to the description to which these data belong (foreign key) |
label | nvarchar (255) | Short label (or name) of scope |
dwbURI | nvarchar (255) | Reference to DiversityWorkbench component |
type | nvarchar (255) | Scope type ("GeographicArea", "Citation", "Observation", "Specimen", "TaxonName", "OtherConcept", "Stage", "Part" or "Sex") |
taxon_id | int | Reference to one of potentially several taxa described by the description (not used, foreign key) |
specimen_id | int | Reference to one of potentially several specimens (collected and preserved) that are being described (not used, foreign key) |
observation_id | int | Reference to one of potentially several observations (not preserved) that are being described (not used, foreign key) |
source_reference_id | int | Reference to one or several literature references on which the description is based (not used, foreign key) |
geographicarea_id | int | Reference to one of potentially several geographic areas refered to in a description (not used, foreign key) |
other_scope_id | int | Reference to further scopes, e.g. stage, sex etc. (foreign key) |
Table: Descriptor
Descriptor (= characters, features) define variables
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of descriptor |
abbreviation | nvarchar (255) | Abbreviated label of descriptor |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the descriptor definition |
display_order | int | A positive number defining the sequence in which descriptors are displayed DefaultValue: '0' |
subclass | nvarchar (255) | The four character subclasses of SDD are all combined here in one entity and distinguished by this attribute ("categorical", "quantitative", "text" or "sequence") DefaultValue: 'categorical' |
statistical_measurement_scale | nvarchar (255) | Scale of descriptor: Categorical may be nominal (unordered, “red/green/blue”) or ordinal (ordered, “bad/medium/good”); Quantitative may be interval (°C) or ratio (mass, length, time, K) DefaultValue: 'nominal' |
usually_exclusive | tinyint | Applicable to categorical (nominal/ordinal) descriptors only. If usually exclusive = 1, then by default the user interface allows only entering one state. Nevertheless, multiple states in the data are valid. DefaultValue: '0' |
state_collection_model | nvarchar (255) | Handling of multiple values: OrSet/AndSet: unordered set combined with or/and, OrSeq/AndSeq: ordered sequence combined with or/and, WithSeq: example is “green with brown”, Between: an example is “oval to elliptic” DefaultValue: 'OrSet' |
mandatory | tinyint | Is the scoring of this descriptor mandatory (required) in each item? DefaultValue: '0' |
repeatability | nvarchar (255) | How reliable and consistent are repeated measurements or scorings of the descriptor by different observers and on different objects? ("ignore", "very low", "low", "below average", "slightly below average", "standard", "slightly above average", "above average", "high" or "very high") DefaultValue: 'standard' |
availability | nvarchar (255) | How available is the descriptor or concept for identification? ("ignore", "very low", "low", "below average", "slightly below average", "standard", "slightly above average", "above average", "high" or "very high") DefaultValue: 'standard' |
measurement_unit | nvarchar (255) | A measurement unit (mm, inch, kg, °C, m/s etc.) or dimensionless scaling factor |
measurement_unit_precedes_value | tinyint | Set to 1 if the measurement unit precedes the value DefaultValue: '0' |
min_plausible_value | float | Applicable to quantitative descriptors only; in support of a plausibility check for values. Example: for tree height this could be 0, i.e. only positive values allowed DefaultValue: '-1.79e+308' |
max_plausible_value | float | Applicable to quantitative descriptors only; in support of a plausibility check for values. Example: for tree height this could be 99 DefaultValue: '1.79e+308' |
wording_before | nvarchar (255) | Representation for natural language output, inserted before the states/value |
wording_after | nvarchar (255) | Representation for natural language output, inserted after the states/value |
data_entry_note | nvarchar (MAX) | A note or prompt when entering or dealing with data |
values_are_integer | tinyint | Set to 1 if the values are integer DefaultValue: '0' |
sequence_type | nvarchar (255) | Type of molecular sequence, "Nucleotide" or "Protein". The value "Nucleotide" covers RNA and DNA sequences DefaultValue: 'Nucleotide' |
symbol_length | tinyint | The number of letters in each symbol. Nucleotides are always codes with 1-letter symbols, but proteins may use 1 or 3-letter codes (e.g. A or Ala for alanine) DefaultValue: '1' |
enable_ambiguity_symbols | tinyint | Set to 1 if ambiguity symbols are supported in the sequence string, e.g. R, Y, S, W for nucleotides or B, Z for proteins DefaultValue: '1' |
gap_symbol | nvarchar (3) | A string identifying the "gap" symbol used in aligned sequences. The gap symbol must always be symbol_length long |
Table: DescriptorInapplicability
The descriptor dependency rules
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
controlled_descriptor_id | int | Reference to the descriptor to which the rule will apply, e.g. which will be inapplicable if controlling state applies to the same description (foreign key) |
controlling_state_id | int | Reference to the controlling categorical state; if present in a description, controlled descriptor is affected according to rule |
rule | nvarchar (255) | The kind of rule creating a descriptor inapplicability ("inapplicable-if", "applicable-if", "inapplicable-computed-from-applicable") DefaultValue: 'inapplicable-if' |
Table: DescriptorStatusData
The status data of a descriptor for a certain description
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
description_id | int | Reference to the description to which these data belong (foreign key) |
descriptor_id | int | Reference to the descriptor to which the status value belongs (foreign key) |
datastatus_id | int | Reference to a status definition. Status is like a marker why data is missing or in need of revision (examples: "unknown", "not applicable", "to be checked", "data withheld" etc.) (foreign key) |
notes | nvarchar (MAX) | Free-form text detailing additional information (rarely used, not multilingual) |
Table: DescriptorTree
The root and definition of a descriptor tree
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
is_complete | tinyint | Set to 1 if this tree includes the largest possible set of descriptors for the taxon set associated with a project (i.e. the "master-descriptor tree", other trees being subsets) DefaultValue: '0' |
label | nvarchar (255) | Short label (or name) of descriptor tree |
type | nvarchar (255) | "mixed", "part-of", "property" or "generalization" |
project_id | int | Each tree belongs to exactly one project (required, foreign key) |
Table: DescriptorTreeNode
The descriptor tree nodes representing either nodes of the tree or descriptors ("leafes" of the tree)
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
parent_node_id | int | Reference to a parent node, creating a true tree; NULL for a root node (foreign key) |
label | nvarchar (255) | Short label (or name) of internal node associated with a concept; NULL for a descriptor node |
abbreviation | nvarchar (255) | Abbreviated label of node |
display_order | int | A positive number defining the sequence in which child nodes are displayed DefaultValue: '0' |
descriptortree_id | int | Reference to a descriptor tree; all nodes must have a direct link to the tree definition (foreign key) |
descriptor_id | int | Reference to a descriptor; NULL if the present node is an inner concept node defining a hierarchy of nodes or descriptors (foreign key) |
Table: DescriptorTreeNodeRecFrequency
Selection of recommended frequency values for descriptor tree parts or single descriptors
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
node_id | int | Reference to the descriptor tree node (foreign key) |
frequency_id | int | Reference to the recommended frequency modifier (foreign key) |
Table: DescriptorTreeNodeRecModifier
Selection of recommended modifier values for descriptor tree parts or single descriptors
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
node_id | int | Reference to the descriptor tree node (foreign key) |
modifier_id | int | Reference to the recommended modifier (foreign key) |
Table: DescriptorTreeNodeRecStatMeasure
Selection of recommended statistical measures for descriptor tree parts or single descriptors
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
node_id | int | Reference to the descriptor tree node (foreign key) |
measure_id | int | Reference to the recommended measure (foreign key) |
Table: Frequency
Definition of frequency modifier values
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of frequency modifier (e.g. "very rare", "rare", "usually" etc.) |
lower_estimate | float | Each frequency modifier defines a frequency range, this is the estimated lowest frequency DefaultValue: '0' |
upper_estimate | float | As above, estimate of upper range for the border; note: ranges may overlap! DefaultValue: '1' |
display_order | int | A positive number defining the sequence in which frequency modifiers are to be displayed DefaultValue: '0' |
Table: ImportMapping
The import mappings to support mapping of external file keys to database keys
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
object_id | int | Reference to the object to which the mapping belongs, references BaseEntity (foreign key) |
session_id | int | Reference to the import session to which the mapping belongs, references ImportMapping (foreign key) |
table_name | varchar (50) | Name of the import table |
parent_key | varchar (255) | Symbolic key of the parent table |
external_key | nvarchar (255) | External key in the import file |
Table: ImportSession
The import sessions to support import of data spread over several files
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
project_id | int | Each import session belongs to exactly one project (required, foreign key) |
detail | nvarchar (MAX) | Detail text explaining the import session definition |
create_timestamp | datetime | Date and time when the import session was created DefaultValue: getdate() |
update_timestamp | datetime | Date and time when the import session was updated DefaultValue: getdate() |
Table: Modifier
Definition of modifier values
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
class | nvarchar (255) | Grouping of modifiers into classes ("Certainty", "Seasonal", "Diurnal", "TreatAsMisinterpretation" or "OtherModifierClass") |
label | nvarchar (255) | Short label (or name) of modifier (e.g. "strong", "probably" etc.) |
display_order | int | A positive number defining the sequence in which modifiers are to be displayed DefaultValue: '0' |
Table: MolecularSequenceData
The text data of a description
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
description_id | int | Reference to description to which these data belong (foreign key) |
descriptor_id | int | Reference to a molecular sequence descriptor to which the sequence text belongs (foreign key) |
sequence | nvarchar (MAX) | Molecular sequence text referring to information on one descriptor |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the values |
Table: MolecularSequenceSamplingData
The molecular sequence data recorded for a sampling event
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
sampling_unit_id | int | Reference to a sampling unit (foreign key) |
descriptor_id | int | Reference to a molecular sequence descriptor to which the sequence text belongs (foreign key) |
sequence | nvarchar (MAX) | Molecular sequence text referring to information on one descriptor |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the values |
Table: OtherScope
Scope values for description scope values for scope types "Other scope", "Part", "Stage" and "Sex"
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of scope (e.g. "male", "female", "adult", "juvenile" etc.) |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the scope and delimitation of the present description |
type | nvarchar (255) | Describes the scope type ("sex", "stage", "part" or "other") |
sex_status_id | int | Reference to sex status value according SDD V5.1 (foreign key) |
Table: Project
Projects define separated workareas in a single database
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
parent_project_id | int | Reference to a parent project, creating a subproject; NULL for a root project (foreign key) |
label | nvarchar (255) | Short label (or name) of project (or subproject); each project defines a separate work environment within a shared database by means of defining sets of descriptors (through DescriptorTree) |
rights_text | nvarchar (255) | The default rights and licence statement for the entire project; BaseEntity provides means to override this for individual objects |
licence_uri | nvarchar (255) | URI of licence for the project; BaseEntity provides means to override this for individual objects |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the project (or subproject) |
restricted_to_descriptortree_id | int | Reference to a descriptor tree (not used, foreign key) |
restricted_to_taxonset_id | int | Reference to a taxon set (not used, foreign key) |
primary_language_code | nvarchar (3) | Language of primary text version (fields directly in tables, may be translated in table Translation); Examples: "de", "en" etc. (ISO 639 language code) |
ProjectProxyID | int | Reference to a project definition of DiversityProjects that allows control of access rights DefaultValue: (0) |
Table: Project_AvailableScope
Scope values available for a certain project
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
project_id | int | Reference to the project for which a shall be available (foreign key) |
scope_id | int | Reference to a scope definition in OtherScope (foreign key) |
Table: QuantitativeSamplingData
The quantitative data recorded for a sampling event
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
measure_id | int | Optional statistical measure (minimum, mean, maximum, ranges, sample size, variance etc.) recorded in value; if NULL, value is a direct measurement (foreign key) |
sampling_unit_id | int | Reference to a sampling unit (foreign key) |
descriptor_id | int | Reference to descriptor which the values record (foreign key) |
value | float | The value for the statistical measure or single measurement/recording |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the values |
modifier_id | int | Optional reference to a modifier definition (e.g. "strongly", "at the base", "in autumn") (foreign key) |
Table: QuantitativeSummaryData
The quantitative data of a description
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
measure_id | int | Reference to the statistical measure (minimum, mean, maximum, ranges, sample size, variance etc.) recorded in value (foreign key) |
description_id | int | Reference to the description to which these data belong (foreign key) |
descriptor_id | int | Reference to the descriptor which the values record (foreign key) |
value | float | The value of the statistical measure |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the values |
modifier_id | int | Optional reference to a modifier definition (e.g. "strongly", "at the base", "in autumn") (foreign key) |
Table: Resource
Hyperlinks to separate rich text/media objects
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
terminology_role | nvarchar (255) | Role in relation to descriptors or states ("unknown"=role not known or not specified; "diagnostic"=optimized for identification; "iconic"=icon/thumbnail, needs text; "normative"=defines a resource object; "primary"=display always, informative without text; "secondary"=display only on request) DefaultValue: 'normative' |
ranking_for_terminology | tinyint | Ranking of the resource with respect to terminology; range: 0 to 10 |
descriptor_id | int | Optional reference to a descriptor (at least 1 of description_id, descriptor_id, state_id or taxon_id must be present) (foreign key) |
state_id | int | Optional reference to a categorical state (at least 1 of description_id, descriptor_id, state_id or taxon_id must be present) (foreign key) |
taxon_role | nvarchar (255) | Role in relation to taxa or descriptions ("unknown"=role not known or not specified; "diagnostic"=optimized for identification; "iconic"=icon/thumbnail, needs text; "normative"=defines a resource object; "primary"=display always, informative without text; "secondary"=display only on request) DefaultValue: 'normative' |
ranking_for_taxon_use | tinyint | Ranking of the resource with respect to taxa or descriptions; range: 0 to 10 |
taxon_id | int | Optional reference to a taxon (at least 1 of description_id, descriptor_id, state_id or taxon_id must be present) (foreign key) |
description_id | int | Optional reference to a description (at least 1 of description_id, descriptor_id, state_id or taxon_id must be present) (foreign key) |
scope_id | int | Reference to the scope of the resource (e.g. "sex", "stage", "season" etc.) |
display_embedded | tinyint | false/0: display as link, true/1: display as embedded media object DefaultValue: '0' |
label | nvarchar (255) | Short label of (or caption for) the resource, e.g. a text displayed below an image or instead of the link |
language_code | nvarchar (3) | Language of the resource itself, use zxx for language neutral/no linguistic content (ISO 639-1) |
display_order | int | A positive number defining the sequence in which multiple resources are displayed DefaultValue: '0' |
rights_text | nvarchar (255) | The rights and licence statement for the resource |
licence_uri | nvarchar (255) | URI of licence for the resource |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the resource definition |
Table: ResourceVariant
Different resource variants/instances/service access points
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
resource_id | int | Reference to the resource to which these variants provide access points (foreign key) |
variant_id | int | Reference to the definition of a variant class e.g. "tiny sample", "small sample", "lower quality", "medium quality", "good quality" or "best quality" (foreign key) |
url | nvarchar (255) | URL of the resource variant |
pixel_width | int | Where applicable (still- or moving image): the width in pixel |
pixel_height | int | Where applicable (still- or moving image): the height in pixel |
duration | int | Where applicable (sound or moving image): the duration in seconds |
size | int | The size of the resource in bytes |
mime_type | nvarchar (255) | Type of the resource as MIME type like image/jpeg; color as color/hexrgb |
Table: ResourceVariant_Enum
Classes for resource variants, values are predefined in the database
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of resource variant class ("tiny sample", "small sample", "lower quality", "medium quality", "good quality" or "best quality") |
code | nvarchar (255) | Brief code equivalent to the (longer) label |
detail | nvarchar (MAX) | Additional detail text explaining the resource variant class |
quality_order | int | A positive number providing a filter mechanism for "tiny sample" to "best quality"; the smaller the number, the less quality a resource has DefaultValue: '0' |
Table: SamplingEvent
A sampling event may contain many sampling units
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
description_id | int | Reference to the description to which these sampling data belong (foreign key) |
label | nvarchar (255) | Free-form text identifying a sampling event to humans. Sampling events have time, location, perhaps purpose and act as a container for multiple sampling units. |
detail | nvarchar (MAX) | Free-form text giving detail or description of sampling event |
date_time | datetime | Date and time when the event occurred; single point or start of duration |
datetimespan_end | datetime | Optional end of a time span or duration within which or during which the event occurred |
geographic_area | nvarchar (255) | A geographic area at which the event occurred |
geographic_area_uri | nvarchar (255) | Reference to a geographic area in DiversityGazetteers |
coord_dec_latitude | float | Latitude of geographical coordinates in signed decimal degrees |
coord_dec_longitude | float | Longitude of geographical coordinates in decimal degrees |
coord_literal | nvarchar (255) | Free-form string, either in addition to or instead of code (a mapping to the controlled vocabulary may be unavailable or considered ambiguous) |
coord_geodeticdatum | nvarchar (50) | Optional, only where knowledge of the geodetic datum is readily available; defaults to WGS84 used in GPS |
Table: SamplingUnit
Sampling unit data
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
sampling_event_id | int | Reference to a sampling event; keeps paired measurements together (several categorical or quantitative observations at the same time on the same object or object part) (foreign key) |
Table: SexStatus_Enum
Values of sex status predefined according to SDD 1.1 rev 5
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of sex status |
code | nvarchar (255) | Code of sex status |
abbreviation | nvarchar (255) | One or two (intuitive) characters |
detail | nvarchar (MAX) | Additional detail text explaining or commenting on the sex status definition |
display_order | int | A positive number defining the sequence in which sex status values are displayed DefaultValue: '0' |
Table: StatisticalMeasure_Enum
The statistical measures predefined according SDD 1.1 rev 5
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record, references BaseEntity (primary key) |
label | nvarchar (255) | Short label (or name) of statistical measure |
code | nvarchar (255) | Code of statistical measure according SDD 1.1 rev 5 |
abbreviation | nvarchar (255) | Abbreviation of statistical measure |
display_order | int | A positive number defining the sequence in which statistical measures are displayed DefaultValue: '0' |
Table: TextDescriptorData
The text data of a description
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
description_id | int | Reference to description to which these data belong (foreign key) |
descriptor_id | int | Reference to a text descriptor to which the free-form text belongs (foreign key) |
content | nvarchar (MAX) | Free-form text referring to information on one descriptor |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the values |
Table: TextSamplingData
Free-form text data recorded for a sampling event
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
sampling_unit_id | int | Reference to a sampling unit (foreign key) |
descriptor_id | int | Reference to descriptor to which the free-form text belongs (foreign key) |
content | nvarchar (MAX) | Free-form text referring to information on one descriptor |
notes | nvarchar (MAX) | Free-form text detailing special cases or additional data beyond the data |
Table: Translation
The translations of entries related to BaseEntity
Column | Data type | Description |
---|---|---|
id | int | Database-internal ID of this record (primary key) |
object_id | int | Reference to the object to which the translation belongs, references BaseEntity (foreign key) |
language_code | nvarchar (3) | Language of representation translation (ISO 639 language code) |
column_id | int | References the translated column name |
contents | nvarchar (MAX) | Translated contents |
Table: TranslationColumn_Enum
The TranslationColumn_Enum contains the column names that are translated in the Translation table
Column | Data type | Description |
---|---|---|
id | int | Database-internal object ID of this record (primary key) |
column | nvarchar (255) | Name of column that is translated in the Translation table |
Footnotes: The following conventions and abbreviations have been used in the tables: Columns of primary key:underlined
The access to the data is managed via projects where every local project of DiversityDescriptions is assigned to a project from DiversityProjects. Every description is assigned to a local project and the descriptors are optionally assigned to several projects by the descriptor trees. DiversityDescription contains the tables UserProxy, ProjectUser and ProjectProxy to allow an independent administration of the basic functions related to projects and users.
Table: ProjectProxy
The projects as stored in the module DiversityProjects
Column | Data type | Description |
---|---|---|
ProjectID | int | ID of the project to which the specimen belongs (Projects are defined in DiversityProjects) |
Project | nvarchar (50) | The name or title of the project as shown in a user interface (Projects are defined in DiversityProjects) |
ProjectURI | nvarchar (255) | URI of a project in a remote module, e.g. refering to database DiversityProjects |
Table: ProjectUser
The projects that a user can access
Column | Data type | Description |
---|---|---|
LoginName | nvarchar (50) | A login name which the user uses for access the DivesityWorkbench, Microsoft domains, etc.. |
ProjectID | int | ID of the project to which the specimen belongs (Projects are defined in DiversityProjects) |
ReadOnly | bit | If the user has only read access to data of this project DefaultValue: (0) |
Table: UserProxy
The user as stored in the module DiversityAgents
Column | Data type | Description |
---|---|---|
LoginName | nvarchar (50) | A login name which the user uses for access the DivesityWorkbench, Microsoft domains, etc.. |
CombinedNameCache | nvarchar (255) | The short name of the user, e.g. P. Smith |
AgentURI | nvarchar (255) | URI of a user in a remote module, e.g. refering to database DiversityAgents |
Queries | xml (MAX) | Queries created by the user |
Footnotes: The following conventions and abbreviations have been used in the tables: Columns of primary key:underlined